#include <grids.h>

Inheritance diagram for Grid_node:

Public Member Functions
int	insert (int grid_list_index)

virtual	~Grid_node ()

virtual void	set_diffusion (double *, int)=0

virtual void	set_num_threads (const int n)=0

virtual void	do_grid_currents (double *, double, int)=0

virtual void	apply_node_flux3D (double dt, double *states)=0

virtual void	volume_setup ()=0

virtual int	dg_adi ()=0

virtual void	variable_step_diffusion (const double states, double ydot)=0

virtual void	variable_step_ode_solve (double *RHS, double dt)=0

virtual void	scatter_grid_concentrations ()=0

virtual void	hybrid_connections ()=0

virtual void	variable_step_hybrid_connections (const double cvode_states_3d, double const ydot_3d, const double cvode_states_1d, double const ydot_1d)=0

Public Attributes
Grid_node *	next

double *	states

double *	states_x

double *	states_y

double *	states_z

double *	states_cur

int	size_x

int	size_y

int	size_z

double	dc_x

double	dc_y

double	dc_z

double	dx

double	dy

double	dz

bool	diffusable

bool	hybrid

BoundaryConditions *	bc

Hybrid_data *	hybrid_data

Concentration_Pair *	concentration_list

Current_Triple *	current_list

ssize_t	num_concentrations

ssize_t	num_currents

int	num_all_currents

int *	proc_offsets

int *	proc_num_currents

int *	proc_flux_offsets

int *	proc_num_fluxes

long *	current_dest

double *	all_currents

unsigned char	VARIABLE_ECS_VOLUME

double *	permeability

double *	alpha

double(*	get_alpha )(double *, int)

double(*	get_permeability )(double *, int)

double	atolscale

int64_t *	ics_surface_nodes_per_seg

int64_t *	ics_surface_nodes_per_seg_start_indices

std::vector< neuron::container::data_handle< double > >	ics_concentration_seg_handles

double **	ics_current_seg_ptrs

double *	ics_scale_factors

int	node_flux_count

long *	node_flux_idx

double *	node_flux_scale

PyObject **	node_flux_src

Detailed Description

Definition at line 82 of file grids.h.

Constructor & Destructor Documentation

◆ ~Grid_node()

virtual Grid_node::~Grid_node ( )

inlinevirtual

Definition at line 144 of file grids.h.

Member Function Documentation

◆ apply_node_flux3D()

virtual void Grid_node::apply_node_flux3D	(	double	dt,
		double *	states
	)

pure virtual

Implemented in ICS_Grid_node, and ECS_Grid_node.

◆ dg_adi()

virtual int Grid_node::dg_adi ( )

pure virtual

Implemented in ICS_Grid_node, and ECS_Grid_node.

◆ do_grid_currents()

virtual void Grid_node::do_grid_currents	(	double *	,
		double	,
		int
	)

pure virtual

Implemented in ICS_Grid_node, and ECS_Grid_node.

◆ hybrid_connections()

virtual void Grid_node::hybrid_connections ( )

pure virtual

Implemented in ICS_Grid_node, and ECS_Grid_node.

◆ insert()

int Grid_node::insert ( int grid_list_index )

Definition at line 810 of file grids.cpp.

◆ scatter_grid_concentrations()

virtual void Grid_node::scatter_grid_concentrations ( )

pure virtual

Implemented in ICS_Grid_node, and ECS_Grid_node.

◆ set_diffusion()

virtual void Grid_node::set_diffusion	(	double *	,
		int
	)

pure virtual

Implemented in ICS_Grid_node, and ECS_Grid_node.

◆ set_num_threads()

virtual void Grid_node::set_num_threads ( const int n )

pure virtual

Implemented in ICS_Grid_node, and ECS_Grid_node.

◆ variable_step_diffusion()

virtual void Grid_node::variable_step_diffusion	(	const double *	states,
		double *	ydot
	)

pure virtual

Implemented in ICS_Grid_node, and ECS_Grid_node.

◆ variable_step_hybrid_connections()

virtual void Grid_node::variable_step_hybrid_connections	(	const double *	cvode_states_3d,
		double *const	ydot_3d,
		const double *	cvode_states_1d,
		double *const	ydot_1d
	)

pure virtual

Implemented in ICS_Grid_node, and ECS_Grid_node.

◆ variable_step_ode_solve()

virtual void Grid_node::variable_step_ode_solve	(	double *	RHS,
		double	dt
	)

pure virtual

Implemented in ICS_Grid_node, and ECS_Grid_node.

◆ volume_setup()

virtual void Grid_node::volume_setup ( )

pure virtual

Implemented in ICS_Grid_node, and ECS_Grid_node.

Member Data Documentation

◆ all_currents

double* Grid_node::all_currents

Definition at line 115 of file grids.h.

◆ alpha

double* Grid_node::alpha

Definition at line 124 of file grids.h.

◆ atolscale

double Grid_node::atolscale

Definition at line 129 of file grids.h.

◆ bc

BoundaryConditions* Grid_node::bc

Definition at line 102 of file grids.h.

◆ concentration_list

Concentration_Pair* Grid_node::concentration_list

Definition at line 104 of file grids.h.

◆ current_dest

long* Grid_node::current_dest

Definition at line 114 of file grids.h.

◆ current_list

Current_Triple* Grid_node::current_list

Definition at line 105 of file grids.h.

◆ dc_x

double Grid_node::dc_x

Definition at line 94 of file grids.h.

◆ dc_y

double Grid_node::dc_y

Definition at line 95 of file grids.h.

◆ dc_z

double Grid_node::dc_z

Definition at line 96 of file grids.h.

◆ diffusable

bool Grid_node::diffusable

Definition at line 100 of file grids.h.

◆ dx

double Grid_node::dx

Definition at line 97 of file grids.h.

◆ dy

double Grid_node::dy

Definition at line 98 of file grids.h.

◆ dz

double Grid_node::dz

Definition at line 99 of file grids.h.

◆ get_alpha

double(* Grid_node::get_alpha) (double *, int)

Definition at line 127 of file grids.h.

◆ get_permeability

double(* Grid_node::get_permeability) (double *, int)

Definition at line 128 of file grids.h.

◆ hybrid

bool Grid_node::hybrid

Definition at line 101 of file grids.h.

◆ hybrid_data

Hybrid_data* Grid_node::hybrid_data

Definition at line 103 of file grids.h.

◆ ics_concentration_seg_handles

std::vector<neuron::container::data_handle<double> > Grid_node::ics_concentration_seg_handles

Definition at line 133 of file grids.h.

◆ ics_current_seg_ptrs

double** Grid_node::ics_current_seg_ptrs

Definition at line 134 of file grids.h.

◆ ics_scale_factors

double* Grid_node::ics_scale_factors

Definition at line 135 of file grids.h.

◆ ics_surface_nodes_per_seg

int64_t* Grid_node::ics_surface_nodes_per_seg

Definition at line 131 of file grids.h.

◆ ics_surface_nodes_per_seg_start_indices

int64_t* Grid_node::ics_surface_nodes_per_seg_start_indices

Definition at line 132 of file grids.h.

◆ next

Grid_node* Grid_node::next

Definition at line 84 of file grids.h.

◆ node_flux_count

int Grid_node::node_flux_count

Definition at line 138 of file grids.h.

◆ node_flux_idx

long* Grid_node::node_flux_idx

Definition at line 139 of file grids.h.

◆ node_flux_scale

double* Grid_node::node_flux_scale

Definition at line 140 of file grids.h.

◆ node_flux_src

PyObject** Grid_node::node_flux_src

Definition at line 141 of file grids.h.

◆ num_all_currents

int Grid_node::num_all_currents

Definition at line 109 of file grids.h.

◆ num_concentrations

ssize_t Grid_node::num_concentrations

Definition at line 106 of file grids.h.

◆ num_currents

ssize_t Grid_node::num_currents

Definition at line 106 of file grids.h.

◆ permeability

double* Grid_node::permeability

Definition at line 122 of file grids.h.

◆ proc_flux_offsets

int* Grid_node::proc_flux_offsets

Definition at line 112 of file grids.h.

◆ proc_num_currents

int* Grid_node::proc_num_currents

Definition at line 111 of file grids.h.

◆ proc_num_fluxes

int* Grid_node::proc_num_fluxes

Definition at line 113 of file grids.h.

◆ proc_offsets

int* Grid_node::proc_offsets

Definition at line 110 of file grids.h.

◆ size_x

int Grid_node::size_x

Definition at line 91 of file grids.h.

◆ size_y

int Grid_node::size_y

Definition at line 92 of file grids.h.

◆ size_z

int Grid_node::size_z

Definition at line 93 of file grids.h.

◆ states

double* Grid_node::states

Definition at line 86 of file grids.h.

◆ states_cur

double* Grid_node::states_cur

Definition at line 90 of file grids.h.

◆ states_x

double* Grid_node::states_x

Definition at line 87 of file grids.h.

◆ states_y

double* Grid_node::states_y

Definition at line 88 of file grids.h.

◆ states_z

double* Grid_node::states_z

Definition at line 89 of file grids.h.

◆ VARIABLE_ECS_VOLUME

unsigned char Grid_node::VARIABLE_ECS_VOLUME

Definition at line 118 of file grids.h.

The documentation for this class was generated from the following files:

/home/docs/checkouts/readthedocs.org/user_builds/nrn/checkouts/3468/src/nrnpython/grids.h
/home/docs/checkouts/readthedocs.org/user_builds/nrn/checkouts/3468/src/nrnpython/grids.cpp

Public Member Functions

Public Attributes

Detailed Description

Constructor & Destructor Documentation

◆ ~Grid_node()

Member Function Documentation

◆ apply_node_flux3D()

◆ dg_adi()

◆ do_grid_currents()

◆ hybrid_connections()

◆ insert()

◆ scatter_grid_concentrations()

◆ set_diffusion()

◆ set_num_threads()

◆ variable_step_diffusion()

◆ variable_step_hybrid_connections()

◆ variable_step_ode_solve()

◆ volume_setup()

Member Data Documentation

◆ all_currents

◆ alpha

◆ atolscale

◆ bc

◆ concentration_list

◆ current_dest

◆ current_list

◆ dc_x

◆ dc_y

◆ dc_z

◆ diffusable

◆ dx

◆ dy

◆ dz

◆ get_alpha

◆ get_permeability

◆ hybrid

◆ hybrid_data

◆ ics_concentration_seg_handles

◆ ics_current_seg_ptrs

◆ ics_scale_factors

◆ ics_surface_nodes_per_seg

◆ ics_surface_nodes_per_seg_start_indices

◆ next

◆ node_flux_count

◆ node_flux_idx

◆ node_flux_scale

◆ node_flux_src

◆ num_all_currents

◆ num_concentrations

◆ num_currents

◆ permeability

◆ proc_flux_offsets

◆ proc_num_currents

◆ proc_num_fluxes

◆ proc_offsets

◆ size_x

◆ size_y

◆ size_z

◆ states

◆ states_cur

◆ states_x

◆ states_y

◆ states_z

◆ VARIABLE_ECS_VOLUME