#include <../../nrnconf.h>
#include <nrnmpi.h>
#include <stdlib.h>
#include <errno.h>
#include "neuron.h"
#include "section.h"
#include "nrn_ansi.h"
#include "nrniv_mf.h"
#include "multisplit.h"
#include "node_order_optim/node_order_optim.h"
#include "utils/profile/profiler_interface.h"
#include "nonvintblock.h"
#include "nrncvode.h"
#include "spmatrix.h"
#include <vector>
#include "profile.h"

Namespaces
	neuron
	In mechanism libraries, cannot use auto const token = nrn_ensure_model_data_are_sorted(); because the return type is incomplete (from include/neuron/model_data.hpp).

Macros
#define	nrnoc_fadvance_c

#define	NRNCTIME 1

#define	NONVINT_ODE_COUNT 5

#define	CTBEGIN double wt = nrnmpi_wtime()

#define	CTADD nth->_ctime += nrnmpi_wtime() - wt

#define	ELIMINATE_T_ROUNDOFF 0

#define	PROFILE 0

Typedefs
typedef int(*	NonVintBlockItem) (int method, int size, double pd1, double pd2, int tid)

Functions
double	nrnmpi_wtime ()

double	chkarg (int, double low, double high)

static void	nrn_fixed_step_thread (neuron::model_sorted_token const &, NrnThread &)

static void	nrn_fixed_step_group_thread (neuron::model_sorted_token const &, NrnThread &)

void	nrn_solve (NrnThread *)

static void	nonvint (neuron::model_sorted_token const &, NrnThread &)

void	nrncvode_set_t (double t)

static void *	nrn_ms_treeset_through_triang (NrnThread *)

static void *	nrn_ms_reduce_solve (NrnThread *)

static void *	nrn_ms_bksub (NrnThread *)

static void *	nrn_ms_bksub_through_triang (NrnThread *)

void *	nrn_multisplit_triang (NrnThread *)

void *	nrn_multisplit_reduce_solve (NrnThread *)

void *	nrn_multisplit_bksub (NrnThread *)

void	fadvance ()

static void	batch_out ()

static void	batch_open ()

static void	batch_close ()

static void	batch_open (char name, double tstop, double tstep, const char comment)

void	batch_run (void)

static void	dt2thread (double adt)

static void	daspk_init_step_thread (neuron::model_sorted_token const &cache_token, NrnThread &nt)

void	nrn_daspk_init_step (double tt, double dteps, int upd)

void	nrn_fixed_step (neuron::model_sorted_token const &cache_token)

void	nrn_fixed_step_group (neuron::model_sorted_token const &cache_token, int n)

void	nrn_extra_scatter_gather (int direction, int tid)

void	nrn_fixed_step_lastpart (neuron::model_sorted_token const &cache_token, NrnThread &nt)

void	nrn_update_voltage (neuron::model_sorted_token const &sorted_token, NrnThread &nt)

void	nrn_calc_fast_imem (NrnThread *_nt)

void	nrn_calc_fast_imem_fixedstep_init (NrnThread *_nt)

void	fcurrent (void)

void	nrn_print_matrix (NrnThread *_nt)

void	fmatrix (void)

int	nrn_errno_check (int i)

void	frecord_init (void)

void	verify_structure (void)

void	nrn_finitialize (int setv, double v)

void	finitialize (void)

void	batch_save (void)

void	nrn_ba (neuron::model_sorted_token const &cache_token, NrnThread &nt, int bat)

int	nrn_nonvint_block_exe (int method, int size, double pd1, double pd2, int tid)

int	set_nonvint_block (NonVintBlockItem func)

int	unset_nonvint_block (NonVintBlockItem func)

int	nrn_nonvint_block_helper (int method, int size, double pd1, double pd2, int tid)

neuron::opaque_model_sorted_token	nrn_ensure_model_data_are_sorted_opaque ()

Variables
double *	nrn_mech_wtime_

double	t

double	dt

void(*	nrn_multisplit_setup_ )()

void(*	nrn_allthread_handle )()

int	state_discon_allowed_

double	hoc_epsilon

void(*	nrnmpi_v_transfer_ )()

void(*	nrnthread_v_transfer_ )(NrnThread *nt)

void(*	nrnthread_vi_compute_ )(NrnThread *nt)

int	cvode_active_

int	stoprun

bool	nrn_use_fast_imem

static FILE *	batch_file

static int	batch_size

static int	batch_n

static double **	batch_var

static int	_upd

static int	step_group_n

static int	step_group_begin

static int	step_group_end

static std::vector< NonVintBlockItem >	nonvint_block_list

Macro Definition Documentation

◆ CTADD

#define CTADD nth->_ctime += nrnmpi_wtime() - wt

Definition at line 78 of file fadvance.cpp.

◆ CTBEGIN

#define CTBEGIN double wt = nrnmpi_wtime()

Definition at line 77 of file fadvance.cpp.

◆ ELIMINATE_T_ROUNDOFF

#define ELIMINATE_T_ROUNDOFF 0

Definition at line 84 of file fadvance.cpp.

◆ NONVINT_ODE_COUNT

#define NONVINT_ODE_COUNT 5

Definition at line 74 of file fadvance.cpp.

◆ NRNCTIME

#define NRNCTIME 1

Definition at line 73 of file fadvance.cpp.

◆ nrnoc_fadvance_c

#define nrnoc_fadvance_c

Definition at line 12 of file fadvance.cpp.

◆ PROFILE

#define PROFILE 0

Definition at line 149 of file fadvance.cpp.

Typedef Documentation

◆ NonVintBlockItem

typedef int(* NonVintBlockItem) (int method, int size, double *pd1, double *pd2, int tid)

Definition at line 1000 of file fadvance.cpp.

Function Documentation

◆ batch_close()

static void batch_close ( )

Definition at line 955 of file fadvance.cpp.

◆ batch_open() [1/2]

static void batch_open ( )

◆ batch_open() [2/2]

static void batch_open	(	char *	name,
		double	tstop,
		double	tstep,
		const char *	comment
	)

static

Definition at line 191 of file fadvance.cpp.

◆ batch_out()

static void batch_out ( )

static

Definition at line 962 of file fadvance.cpp.

◆ batch_run()

void batch_run ( void )

Definition at line 233 of file fadvance.cpp.

◆ batch_save()

void batch_save ( void )

Definition at line 972 of file fadvance.cpp.

◆ chkarg()

double chkarg	(	int	arg,
		double	low,
		double	high
	)

Definition at line 626 of file code2.cpp.

◆ daspk_init_step_thread()

static void daspk_init_step_thread	(	neuron::model_sorted_token const &	cache_token,
		NrnThread &	nt
	)

static

Definition at line 299 of file fadvance.cpp.

◆ dt2thread()

static void dt2thread ( double adt )

static

Definition at line 282 of file fadvance.cpp.

◆ fadvance()

void fadvance ( )

Definition at line 152 of file fadvance.cpp.

◆ fcurrent()

void fcurrent ( void )

Definition at line 644 of file fadvance.cpp.

◆ finitialize()

void finitialize ( void )

Definition at line 940 of file fadvance.cpp.

◆ fmatrix()

void fmatrix ( void )

Definition at line 707 of file fadvance.cpp.

◆ frecord_init()

void frecord_init ( void )

Definition at line 780 of file fadvance.cpp.

◆ nonvint()

static void nonvint	(	neuron::model_sorted_token const &	sorted_token,
		NrnThread &	nt
	)

static

Definition at line 737 of file fadvance.cpp.

◆ nrn_ba()

void nrn_ba	(	neuron::model_sorted_token const &	cache_token,
		NrnThread &	nt,
		int	bat
	)

Definition at line 989 of file fadvance.cpp.

◆ nrn_calc_fast_imem()

void nrn_calc_fast_imem ( NrnThread * _nt )

Definition at line 610 of file fadvance.cpp.

◆ nrn_calc_fast_imem_fixedstep_init()

void nrn_calc_fast_imem_fixedstep_init ( NrnThread * _nt )

Definition at line 624 of file fadvance.cpp.

◆ nrn_daspk_init_step()

void nrn_daspk_init_step	(	double	tt,
		double	dteps,
		int	upd
	)

Definition at line 307 of file fadvance.cpp.

◆ nrn_ensure_model_data_are_sorted_opaque()

neuron::opaque_model_sorted_token nrn_ensure_model_data_are_sorted_opaque ( )

Definition at line 1069 of file fadvance.cpp.

◆ nrn_errno_check()

int nrn_errno_check ( int i )

Definition at line 767 of file fadvance.cpp.

◆ nrn_extra_scatter_gather()

void nrn_extra_scatter_gather	(	int	direction,
		int	tid
	)

Definition at line 506 of file cvodeobj.cpp.

◆ nrn_finitialize()

void nrn_finitialize	(	int	setv,
		double	v
	)

Definition at line 805 of file fadvance.cpp.

◆ nrn_fixed_step()

void nrn_fixed_step ( neuron::model_sorted_token const & cache_token )

Definition at line 324 of file fadvance.cpp.

◆ nrn_fixed_step_group()

void nrn_fixed_step_group	(	neuron::model_sorted_token const &	cache_token,
		int	n
	)

Definition at line 379 of file fadvance.cpp.

◆ nrn_fixed_step_group_thread()

static void nrn_fixed_step_group_thread	(	neuron::model_sorted_token const &	cache_token,
		NrnThread &	nt
	)

static

Definition at line 436 of file fadvance.cpp.

◆ nrn_fixed_step_lastpart()

void nrn_fixed_step_lastpart	(	neuron::model_sorted_token const &	cache_token,
		NrnThread &	nt
	)

Definition at line 502 of file fadvance.cpp.

◆ nrn_fixed_step_thread()

static void nrn_fixed_step_thread	(	neuron::model_sorted_token const &	cache_token,
		NrnThread &	nt
	)

static

Definition at line 457 of file fadvance.cpp.

◆ nrn_ms_bksub()

void * nrn_ms_bksub ( NrnThread * nth )

static

Definition at line 545 of file fadvance.cpp.

◆ nrn_ms_bksub_through_triang()

void * nrn_ms_bksub_through_triang ( NrnThread * nth )

static

Definition at line 558 of file fadvance.cpp.

◆ nrn_ms_reduce_solve()

void * nrn_ms_reduce_solve ( NrnThread * nth )

static

Definition at line 541 of file fadvance.cpp.

◆ nrn_ms_treeset_through_triang()

void * nrn_ms_treeset_through_triang ( NrnThread * nth )

static

Definition at line 525 of file fadvance.cpp.

◆ nrn_multisplit_bksub()

void* nrn_multisplit_bksub ( NrnThread * nt )

Definition at line 1920 of file multisplit.cpp.

◆ nrn_multisplit_reduce_solve()

void* nrn_multisplit_reduce_solve ( NrnThread * nt )

Definition at line 1914 of file multisplit.cpp.

◆ nrn_multisplit_triang()

void* nrn_multisplit_triang ( NrnThread * nt )

Definition at line 1910 of file multisplit.cpp.

◆ nrn_nonvint_block_exe()

int nrn_nonvint_block_exe	(	int	method,
		int	size,
		double *	pd1,
		double *	pd2,
		int	tid
	)

Definition at line 1004 of file fadvance.cpp.

◆ nrn_nonvint_block_helper()

int nrn_nonvint_block_helper	(	int	method,
		int	size,
		double *	pd1,
		double *	pd2,
		int	tid
	)

Definition at line 1051 of file fadvance.cpp.

◆ nrn_print_matrix()

void nrn_print_matrix ( NrnThread * _nt )

Definition at line 664 of file fadvance.cpp.

◆ nrn_solve()

void nrn_solve ( NrnThread * _nt )

Definition at line 333 of file solve.cpp.

◆ nrn_update_voltage()

void nrn_update_voltage	(	neuron::model_sorted_token const &	sorted_token,
		NrnThread &	nt
	)

Definition at line 572 of file fadvance.cpp.

◆ nrncvode_set_t()

void nrncvode_set_t ( double t )

Definition at line 137 of file cvodestb.cpp.

◆ nrnmpi_wtime()

double nrnmpi_wtime ( )

Definition at line 175 of file nrnmpi.cpp.

◆ set_nonvint_block()

int set_nonvint_block ( NonVintBlockItem func )

Definition at line 1025 of file fadvance.cpp.

◆ unset_nonvint_block()

int unset_nonvint_block ( NonVintBlockItem func )

Definition at line 1035 of file fadvance.cpp.

◆ verify_structure()

void verify_structure ( void )

Definition at line 792 of file fadvance.cpp.

Variable Documentation

◆ _upd

int _upd

static

Definition at line 298 of file fadvance.cpp.

◆ batch_file

FILE* batch_file

static

Definition at line 186 of file fadvance.cpp.

◆ batch_n

int batch_n

static

Definition at line 188 of file fadvance.cpp.

◆ batch_size

int batch_size

static

Definition at line 187 of file fadvance.cpp.

◆ batch_var

double** batch_var

static

Definition at line 189 of file fadvance.cpp.

◆ cvode_active_

int cvode_active_

Definition at line 144 of file fadvance.cpp.

◆ dt

double dt

Definition at line 52 of file fadvance.cpp.

◆ hoc_epsilon

double hoc_epsilon

extern

Definition at line 221 of file hoc_init.cpp.

◆ nonvint_block_list

std::vector<NonVintBlockItem> nonvint_block_list

static

Definition at line 1002 of file fadvance.cpp.

◆ nrn_allthread_handle

void(* nrn_allthread_handle) () ( )

Definition at line 68 of file fadvance.cpp.

◆ nrn_mech_wtime_

double* nrn_mech_wtime_

extern

Definition at line 38 of file treeset.cpp.

◆ nrn_multisplit_setup_

void(* nrn_multisplit_setup_) () ( )

extern

Definition at line 50 of file treeset.cpp.

◆ nrn_use_fast_imem

bool nrn_use_fast_imem

Definition at line 147 of file fadvance.cpp.

◆ nrnmpi_v_transfer_

void(* nrnmpi_v_transfer_) () ( )

Definition at line 138 of file fadvance.cpp.

◆ nrnthread_v_transfer_

void(* nrnthread_v_transfer_) (NrnThread *nt) ( NrnThread * nt )

Definition at line 139 of file fadvance.cpp.

◆ nrnthread_vi_compute_

void(* nrnthread_vi_compute_) (NrnThread *nt) ( NrnThread * nt )

Definition at line 141 of file fadvance.cpp.

◆ state_discon_allowed_

int state_discon_allowed_

extern

Definition at line 108 of file init.cpp.

◆ step_group_begin

int step_group_begin

static

Definition at line 376 of file fadvance.cpp.

◆ step_group_end

int step_group_end

static

Definition at line 377 of file fadvance.cpp.

◆ step_group_n

int step_group_n

static

Definition at line 375 of file fadvance.cpp.

◆ t

double t

extern

Definition at line 57 of file cvodeobj.cpp.

Namespaces

Macros

Typedefs

Functions

Variables

Macro Definition Documentation

◆ CTADD

◆ CTBEGIN

◆ ELIMINATE_T_ROUNDOFF

◆ NONVINT_ODE_COUNT

◆ NRNCTIME

◆ nrnoc_fadvance_c

◆ PROFILE

Typedef Documentation

◆ NonVintBlockItem

Function Documentation

◆ batch_close()

◆ batch_open() [1/2]

◆ batch_open() [2/2]

◆ batch_out()

◆ batch_run()

◆ batch_save()

◆ chkarg()

◆ daspk_init_step_thread()

◆ dt2thread()

◆ fadvance()

◆ fcurrent()

◆ finitialize()

◆ fmatrix()

◆ frecord_init()

◆ nonvint()

◆ nrn_ba()

◆ nrn_calc_fast_imem()

◆ nrn_calc_fast_imem_fixedstep_init()

◆ nrn_daspk_init_step()

◆ nrn_ensure_model_data_are_sorted_opaque()

◆ nrn_errno_check()

◆ nrn_extra_scatter_gather()

◆ nrn_finitialize()

◆ nrn_fixed_step()

◆ nrn_fixed_step_group()

◆ nrn_fixed_step_group_thread()

◆ nrn_fixed_step_lastpart()

◆ nrn_fixed_step_thread()

◆ nrn_ms_bksub()

◆ nrn_ms_bksub_through_triang()

◆ nrn_ms_reduce_solve()

◆ nrn_ms_treeset_through_triang()

◆ nrn_multisplit_bksub()

◆ nrn_multisplit_reduce_solve()

◆ nrn_multisplit_triang()

◆ nrn_nonvint_block_exe()

◆ nrn_nonvint_block_helper()

◆ nrn_print_matrix()

◆ nrn_solve()

◆ nrn_update_voltage()

◆ nrncvode_set_t()

◆ nrnmpi_wtime()

◆ set_nonvint_block()

◆ unset_nonvint_block()

◆ verify_structure()

Variable Documentation

◆ _upd

◆ batch_file

◆ batch_n

◆ batch_size

◆ batch_var

◆ cvode_active_

◆ dt

◆ hoc_epsilon

◆ nonvint_block_list

◆ nrn_allthread_handle

◆ nrn_mech_wtime_

◆ nrn_multisplit_setup_

◆ nrn_use_fast_imem

◆ nrnmpi_v_transfer_

◆ nrnthread_v_transfer_

◆ nrnthread_vi_compute_

◆ state_discon_allowed_

◆ step_group_begin