nrncore_io.cpp File Reference

#include "nrncore_io.h"
#include "nrncore_write/data/cell_group.h"
#include "nrncore_write/callbacks/nrncore_callbacks.h"
#include <cstdlib>
#include "nrnmpi.h"
#include "section.h"
#include "hocdec.h"
#include "ocfile.h"
#include "nrnran123.h"
#include "cvodeobj.h"
#include "netcvode.h"
#include "vrecitem.h"
#include <fstream>
#include <sstream>
#include "nrnsection_mapping.h"

Go to the source code of this file.

Macros
#define	writeint(p, size)   writeint_(p, size, f)
#define	writedbl(p, size)   writedbl_(p, size, f)

Functions
void	create_dir_path (const std::string &path)
	create directory with given path More...
std::string	get_write_path ()
std::string	get_filename (const std::string &path, std::string file_name)
void	write_memb_mech_types (const char *fname)
void	write_globals (const char *fname)
void	write_nrnthread (const char *path, NrnThread &nt, CellGroup &cg)
void	writeint_ (int *p, size_t size, FILE *f)
void	writedbl_ (double *p, size_t size, FILE *f)
void	write_uint32vec (std::vector< uint32_t > &vec, FILE *f)
void	nrnbbcore_vecplay_write (FILE *f, NrnThread &nt)
static void	fgets_no_newline (char *s, int size, FILE *f)
void	write_nrnthread_task (const char *path, CellGroup *cgs, bool append)
	Write all dataset ids to files.dat. More...
void	nrn_write_mapping_info (const char *path, int gid, NrnMappingInfo &minfo)
	dump mapping information to gid_3.dat file More...

Variables
short *	nrn_is_artificial_
int *	bbcore_dparam_size
bbcore_write_t *	nrn_bbcore_write_
NetCvode *	net_cvode_instance
void(*	nrnthread_v_transfer_ )(NrnThread *)
int	chkpnt
const char *	bbcore_write_version = "1.8"

Macro Definition Documentation

writedbl

#define writedbl	(		p,
			size
	)		writedbl_(p, size, f)

Definition at line 317 of file nrncore_io.cpp.

writeint

#define writeint	(		p,
			size
	)		writeint_(p, size, f)

Definition at line 316 of file nrncore_io.cpp.

Function Documentation

create_dir_path()

void create_dir_path

(

const std::string &

path

)

create directory with given path

Definition at line 28 of file nrncore_io.cpp.

fgets_no_newline()

static void fgets_no_newline ( char *  s, int  size, FILE *  f  )

static

Definition at line 343 of file nrncore_io.cpp.

get_filename()

std::string get_filename	(	const std::string &	path,
		std::string	file_name
	)

Definition at line 51 of file nrncore_io.cpp.

get_write_path()

std::string get_write_path

(

)

Definition at line 43 of file nrncore_io.cpp.

nrn_write_mapping_info()

void nrn_write_mapping_info	(	const char *	path,
		int	gid,
		NrnMappingInfo &	minfo
	)

dump mapping information to gid_3.dat file

full path of mapping file

number of gids in NrnThread

all cells mapping information in NrnThread

gid, #section, #compartments, #sectionlists

section list name, number of sections, number of segments

section - segment mapping

Definition at line 531 of file nrncore_io.cpp.

nrnbbcore_vecplay_write()

void nrnbbcore_vecplay_write	(	FILE *	f,
		NrnThread &	nt
	)

Definition at line 319 of file nrncore_io.cpp.

write_globals()

void write_globals

(

const char *

fname

)

Definition at line 74 of file nrncore_io.cpp.

write_memb_mech_types()

void write_memb_mech_types

(

const char *

fname

)

Definition at line 58 of file nrncore_io.cpp.

write_nrnthread()

void write_nrnthread	(	const char *	path,
		NrnThread &	nt,
		CellGroup &	cg
	)

Definition at line 116 of file nrncore_io.cpp.

write_nrnthread_task()

void write_nrnthread_task	(	const char *	path,
		CellGroup *	cgs,
		bool	append
	)

Write all dataset ids to files.dat.

Format of the files.dat file is:

version string
-1 (if model uses gap junction)
n (number of datasets) in format %10d
id1
id2
...
idN

Writing the file with task, correspondent number of threads and list of correspondent first gids

Definition at line 366 of file nrncore_io.cpp.

write_uint32vec()

void write_uint32vec	(	std::vector< uint32_t > &	vec,
		FILE *	f
	)

Definition at line 310 of file nrncore_io.cpp.

writedbl_()

void writedbl_	(	double *	p,
		size_t	size,
		FILE *	f
	)

Definition at line 304 of file nrncore_io.cpp.

writeint_()

void writeint_	(	int *	p,
		size_t	size,
		FILE *	f
	)

Definition at line 298 of file nrncore_io.cpp.

Variable Documentation

bbcore_dparam_size

int* bbcore_dparam_size

extern

Definition at line 117 of file nrncore_write.cpp.

bbcore_write_version

const char* bbcore_write_version = "1.8"

Definition at line 25 of file nrncore_io.cpp.

chkpnt

int chkpnt

Definition at line 24 of file nrncore_io.cpp.

net_cvode_instance

NetCvode* net_cvode_instance

extern

Definition at line 26 of file cvodestb.cpp.

nrn_bbcore_write_

bbcore_write_t* nrn_bbcore_write_

extern

Definition at line 173 of file init.cpp.

nrn_is_artificial_

short* nrn_is_artificial_

extern

Definition at line 214 of file init.cpp.

nrnthread_v_transfer_

void(* nrnthread_v_transfer_) (NrnThread *) ( NrnThread *  nt )

extern

Definition at line 139 of file fadvance.cpp.